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Full list of publication is available on google scholar.
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  1. Li, Lin, Zhe Jia, Yunhui Peng, Arghya Chakravorty, Lexuan Sun, and Emil Alexov. DelphiForce web server: electrostatic forces and energy calculations and visualization. Bioinformatics (2017).

  2. Li, Lin, Arghya Chakravorty, Emil Alexov. DelPhiForce, a tool for electrostatic force calculations: Applications to macromolecular binding, Journal of Computational Chemistry 38.9 (2017): 584-593.

  3. Jia, Zhe, Lin Li, Arghya Chakravorty, and Emil Alexov. Treating ion distribution with Gaussian-based smooth dielectric function in DelPhi. Journal of Computational Chemistry (2017).

  4. Chakravorty, Arghya, Zhe Jia, Lin Li, and Emil Alexov. A new DelPhi feature for modeling electrostatic potential around proteins: Role of bound ions and implications for Zeta-potential. Langmuir (2017).

  5. Lin Li, Joshua Alper, and Emil Alexov, Cytoplasmic dynein binding, run length, and velocity are guided by long-range electrostatic interactions, Scientific Reports 6 (2016).

  6. Arghya Chakavorty, Lin Li, and Emil Alexov. Electrostatic component of binding energy: Interpreting predictions from poisson-boltzmann equation and modeling protocols. Journal of Computational Chemistry 37.28 (2016): 2495-2507.

  7. Lin Li, Joshua Alper, and Emil Alexov. Multiscale method for modeling binding phenomena involving large objects: application to kinesin motor domains motion along microtubules, Scientific Reports, 6 (2016): 23249.

  8. (book chapter) Brandon Campbell, Lin Li, Emil Alexov, & Ohshima, H. (2016). Dielectric Properties of Biological Macromolecules and Biomolecule-Water Interfaces. Encyclopedia of Biocolloid and Biointerface Science 2V Set, 380-390.

  9. Lili Sun, Marcin Tabaka, Sen Hou, Lin Li, Krzysztof Burdzy, Aleksei Aksimentiev, Christopher Maffeo, Xuzhu Zhang, Robert Holyst. The Hinge Region Strengthens the Nonspecific Interaction between Lac-Repressor and DNA: A Computer Simulation Study.The Hinge. PloS one 11.3 (2016): e0152002.

  10. Lin Wang, Lin Li, and Emil Alexov. pKa Predictions for Proteins, RNAs and DNAs with the Gaussian Dielectric Function Using DelPhiPKapKa. Proteins: Structure, Function, and Bioinformatics 83.12 (2015): 2186-2197.

  11. Lin Li, Lin Wang, Emil Alexov, On the energy components governing molecular recognition in the framework of continuum approaches, Frontiers in Molecular Biosciences 2 (2015): 5.

  12. Tugba G. Kucukkal, Marharyta Petukh, Lin Li, and Emil Alexov, Structural and physico-chemical effects of disease and non disease nsSNPs on proteins, Current opinion in structural biology 32 (2015): 18-24.

  13. Gao, Fang, Ling-Hong Zhang, Tang-Feng Su, Lin Li, Rui Zhou, Miao Peng, Cai-Hua Wu et al. "Signaling Mechanism of Cannabinoid Receptor-2 Activation-Induced β-Endorphin Release."  Molecular neurobiology (2015): 1-10.

  14. Lin Li, Chuan Li, Emil Alexov, On the Modeling of Polar Component of Solvation Energy Using Smooth Gaussian-Based Dielectric Function, Journal of Theoretical and Computational Chemistry, 2014.

  15. Roberta Dias$, Lin Li$, Thereza A. Soares and Emil Alexov, Modeling the Electrostatic Potential of Asymmetric Lipopolysaccharide Membranes: The MEMPOT Algorithm Implemented in DelPhi, Journal of computational chemistry (2014). ($ contributed equally)

  16. Praveen Nedumpully-Govindan, Lin Li, Emil G Alexov, Mark A Blenner, Feng Ding, Structural and energetic determinants of tyrosplprotein sulfotransferase sulfation specificity, Bioinformatics, 2014

  17. Lin Li, Chuan Li, Zhe Zhang, Emil Alexov, On the Dielectric "Constant" of Proteins: Smooth Dielectric Function of Macromolecular Modeling and Its Implementation in DelPhi, J Chem Theory Comput. 2013 Apr 9;9(4):2126-2136.

  18. Lin Li, Yanzhao Huang, and Yi Xiao, How to Use Not-Always Reliable Binding Site Information in Protein-Protein Docking Predicition, PloS one 8.10 (2013)

  19. Chuan Li, Lin Li, Marharyta Petukh, Emil Alexov, Progress in developing Poisson-Boltzmann equation solvers, Molecular Based Mathematical Biology. Volume 1, Pages 42-62

  20. Chuan Li, Marharyta Petukh, Lin Li, Emil Alexov, Continuous development of schemes for patallel computing of electrostatics in biological systems: Implementation in DelPhi, J Comput Chem. 2013 Jun 4. doi: 10.1002/jcc.23340. [Epub ahead of print] PMID: 23733490

  21. Huang, Yangyu, Shiyong Liu, Dachuan Guo, Lin Li, and Yi Xiao. A novel protocol for three-dimensional structure prediction of RNA-protein complexes, Scientific reports 3 (2013).

  22. Lin Li, Li C, Sarkar S, Zhang J, Witham S, Zhang Z, Wang L, Smith N, Petukh M, Alexov E.* DelPhi: a comprehensive suite for DelPhi software and associated resources, BMC Biophys, (2012) May14;4(1):9.

  23. Smith N, Campbell B, Li L, Li C, Alexov E., Protein Nano-Object Integrator (ProNOI) for generating atomic style objects for molecular modeling, BMC Struct Biol. 2012 Dec 5;12:31. doi:10.1186/1472-6807-12-31.

  24. Chuan Li, Lin Li, Marharyta Petukh and Emil Alexov; Progress in developing Posson-Boltzmann equation solvers, Molecular Based Mathematical Biology. Volume 1, Pages 42-62.

  25. Petukh M, Zhenirovskyy M, Li C, Li L, Wang L, Alexov E, Predicting nonspecific ion binding using Delphi, Biophys J. 2012 Jun 20, 102(12)

  26. Chuan Li, Lin Li, Jie Zhang, Alexov E.*, Highly efficient and exact method for parallization of grid-based algorithms and its implementation in DelPhi, J Comput Chem. (2012)

  27. Lin Wang, Shawn Witham, Zhe Zhang, Lin Li, Michael Hodsdon and Emil Alexov*, In silico investigation of pH-dependence of prolactin and human growth hormone binding to human prolactin receptor, Comm. Comp. Phys., (2013), 13, 207-222

  28. Nicholas Smith, Subhra Sarkar, Shawn Witham, Jie Zhang, Lin Li, Chuan Li and Emil Alexov*, DelPhi Web Server v2: Incorporating atomic-style geometrical figures into the comuptational protocol, Bioinformatics (2012), 28(12):1655-7.

  29. Lin Li, Dachuan Guo, Yangyu Huang, Shiyong Liu, Yi Xiao*, ASPDock: protein-protein docking algorithm using atomic solvation parameters model, BMC Bioinformatics, 2011, 12(1): 36.

  30. Changjun Chen, Lin Li and Yi Xiao*, Identification of key residues in proteins by using their physical characters. Physical Review E. 2006, 73(4): 41926.

  31. Changjun Chen, Lin Li and Yi Xiao*, All-Atom Contact Potential Approach to Protein Thermostability Analysis, Biopolymers, 2007, 85(1): 28.

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